論文

Takashi Shiratori, Ken‐ichiro Ishida (2024) Rhabdamoeba marina is a heterotrophic relative of chlorarachnid algae. Journal of Eukaryotic Microbiology, 71:e13010 

https://doi.org/10.1111/jeu.13010    📃Tsukuba Repository

Yana Eglit, Takashi Shiratori, Jon Jerlström-Hultqvist, Kelsey Williamson, Andrew J. Roger, Ken-Ichiro Ishida, Alastair G. B. Simpson. (2024) Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora. Current Biology, 34:451-459

https://doi.org/10.1016/j.cub.2023.12.032

Takashi Shiratori, Yuta Kato, Ken‐ichiro Ishida (2024) Molecular and morphological characterization of three novel Minorisa species (Chlorarachnea) and proposal for an emended description of the Minorisa minuta. Phycological Research, 72:27–35

https://doi.org/10.1111/pre.12533    📃Tsukuba Repository

Jazmin Blaz, Luis Javier Galindo, Aaron A Heiss, Harpreet Kaur, Guifré Torruella, Ashley Yang, L Alexa Thompson, Alexander Filbert, Sally Warring, Apurva Narechania, Takashi Shiratori, Ken-ichiro Ishida, Joel B Dacks, Purificación López-García, David Moreira, Eunsoo Kim, Laura Eme (2023) One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. Scientific Data, 10:603 https://doi.org/10.1038/s41597-023-02488-2

Joan M Bernhard, Hidetaka Nomaki, Takashi Shiratori, Anastasia Elmendorf, Akinori Yabuki, Katsunori Kimoto, Masashi Tsuchiya, Motohiro Shimanaga (2023) Hydrothermal vent chimney-base sediments as unique habitat for meiobenthos and nanobenthos: observations on millimeter-scale distributions. Frontiers in Marine Science, 9

https://doi.org/10.3389/fmars.2022.1033381

Laura Eme Naoji Yubuki, Guifré Torruella, Luis Javier Galindo, Aaron A. Heiss, Maria Cristina Ciobanu, Takashi Shiratori, Ken-ichiro Ishida, Jazmin Blaz, Eunsoo Kim, David Moreira, Purificación López-García (2023) Molecular and morphological characterization of four new ancyromonad genera and proposal for an updated taxonomy of the Ancyromonadida. Journal of Eukaryotic Microbiology, 70:e12997

https://doi.org/10.1111/jeu.12997

Euki Yazaki, Akinori Yabuki, Yuki Nishimura, Takashi Shiratori, Tetsuo Hashimoto, Yuji Inagaki (2022) Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes. Frontiers in Ecology and Evolution, 10

https://doi.org/10.3389/fevo.2022.1030570

Euki Yazaki, Keitaro Kume, Takashi Shiratori, Yana Eglit, Goro Tanifuji, Ryo Harada, Alastair GB Simpson, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki (2020) Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP. Proceedings of the Royal Society B, 287:20201538

http://doi.org/10.1098/rspb.2020.1538

Yuki Nishimura, Keitaro Kume, Keito Sonehara, Goro Tanifuji, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki, Moriya Ohkuma (2020) Mitochondrial Genomes of Hemiarma marina and Leucocryptos marina Revised the Evolution of Cytochrome c Maturation in Cryptista. Frontiers in Ecology and Evolution, 8

http://doi.org/10.3389/fevo.2020.00140

Takashi Shiratori, Akinori Yabuki, Ken-ichiro Ishida (2020) Morphology, Ultrastructure, and Phylogeny of Two Novel Species of Ventrifissura (V. oblonga n. sp. and V. velata n. sp., Thecofilosea, Cercozoa).  Protist, 171:125731

http://doi.org/10.1016/j.protis.2020.125731    📃Tsukuba Repository

Takashi Shiratori, Suzuki Shigekatsu, Yukako Kakizawa, Ken-ichiro Ishida (2019) Phagocytosis-like cell engulfment by a novel planctomycete bacterium. Nature Communicarions, 10:5529

http://doi.org/10.1038/s41467-019-13499-2

Rabindra Thakur, Takashi Shiratori, Ken-ichiro Ishida (2019) Taxon-rich Multigene Phylogenetic Analyses Resolve the Phylogenetic Relationship Among Deep-branching Stramenopiles. Protist, 170

http://doi.org/10.1016/j.protis.2019.125682

Yuki Nishimura, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Moriya Ohkuma Yuji Inagaki (2019) Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127. Scientific Reports, 9:4850

http://doi.org/10.1038/s41598-019-41238-6

Yuichiro Kashiyama, Akiko Yokoyama, Takashi Shiratori, 他41名 (2019) Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME journal, 13:1899–1910

http://doi.org/10.1038/s41396-019-0377-0

 Hiroya Araie, Hideto Nakamura, Jaime L. Toney, Heather A. Haig, Julien Plancq, Takashi Shiratori, Peter R. Leavitt, Osamu Seki, Ken-ichiro Ishida, Ken Sawada, Iwane Suzuki, Yoshihiro Shiraiwa (2018) Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates. Organic Geochemistry, 121:89-103

http://doi.org/10.1016/j.orggeochem.2018.04.008

Matthew W Brown, Aaron A Heiss, Ryoma Kamikawa, Yuji Inagaki, Akinori Yabuki, Alexander K Tice, Takashi Shiratori, Ken-Ichiro Ishida, Tetsuo Hashimoto, Alastair G B Simpson, Andrew J Roger (2018) Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group. Genome Biology and Evolution, 10:427-433

http://doi.org/10.1093/gbe/evy014

Daria Tashyreva, Galina Prokopchuk, Akinori Yabuki, Binnypreet Kaur, Drahomíra Faktorová, Jan Votýpka, Chiho Kusaka, Katsunori Fujikura, Takashi Shiratori, Ken-Ichiro Ishida, Aleš Horák, Julius Lukeš (2018) Phylogeny and morphology of new diplonemids from Japan. Protist, 169:158-179

http://doi.org/10.1016/j.protis.2018.02.001

Takashi Shiratori, Sakuya Fujita, Tenma Shimizu, Takeshi Nakayama, Ken-ichiro Ishida. (2017) Viridiuvalis adhaerens gen. et sp. nov., a novel colony-forming chlorarachniophyte. Journal of Plant Research, 130:999-1012

http://doi.org/10.1007/s10265-017-0961-1    📃Tsukuba Repository

Takashi Shiratori, Rabindra Thakur, Ken-Ichiro Ishida (2017) Pseudophyllomitus vesiculosus (Larsen and Patterson 1990) Lee, 2002, a poorly studied phagotrophic biflagellate is the first characterized member of stramenopile environmental clade MAST-6. Protist, 168:439-451

http://doi.org/10.1016/j.protis.2017.06.004    📃Tsukuba Repository

Nakamura Hideto, Sawada Ken, Araie Hiroya, Takashi Shiratori, Ishida Ken-ichiro, Suzuki Iwane, Shiraiwa Yoshihiro (2016) Composition of long chain alkenones and alkenoates as a function of growth temperature in marine haptophyte Tisochrysis lutea. Organic Geochemistry, 99:78-89

http://doi.org/10.1016/j.orggeochem.2016.06.006

Takashi Shiratori, Ken-Ichiro Ishida (2016) A new heterotrophic cryptomonad: Hemiarma marina n. g., n. sp. The Journal of Eukaryotic Microbiology, 63:804-812

http://doi.org/10.1111/jeu.12327    📃Tsukuba Repository

Takashi Shiratori, Ken-Ichiro Ishida (2016) Entamoeba marina n. sp.; a new species of Entamoeba isolated from tidal flat sediment of Iriomote Island, Okinawa, Japan. The Journal of Eukaryotic Microbiology, 63:280-286

http://doi.org/10.1111/jeu.12276    📃Tsukuba Repository

Takashi Shiratori, Ken-Ichiro Ishida (2016) Trachyrhizium urniformis n. g., n. sp., a novel marine filose thecate amoeba related to a cercozoan environmental clade (novel clade 4). The Journal of Eukaryotic Microbiology, 63:722-731

http://doi.org/10.1111/jeu.12319    📃Tsukuba Repository

Ryoma Kamikawa, Takashi Shiratori, Ken-ichiro Ishida, Hideaki Miyashita, Andrew J. Roger (2016) Group II intron-mediated trans-splicing in the gene-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans. Genome Biology and Evolution, 8:458-466

http://doi.org/10.1093/gbe/evw011

Yuuhiko Tanabe, Yusuke Okazaki, Masaki Yoshida, Hiroshi Matsuura, Atsushi Kai, Takashi Shiratori, Ken-ichiro Ishida, Shin-ichi Nakano, Makoto M. Watanabe (2015) A novel alphaproteobacterial ectosymbiont promotes the growth of the hydrocarbon-rich green alga Botryococcus braunii. Scientific Reports

http://doi.org/10.1038/srep10467

Takashi Shiratori, Takeshi Nakayama, Ken-ichiro Ishida (2015) A new deep-branching stramenopile, Platysulcus tardus gen. nov., sp. nov. Protist, 166:337-348

http://doi.org/10.1016/j.protis.2015.05.001    📃Tsukuba Repository

Takeshi Nakayama, Atsushi Nakamura, Akiko Yokoyama, Takashi Shiratori, Isao Inouye, Ken-ichiro Ishida (2014) Taxonomic study of a new eustigmatophycean alga, Vacuoliviride crystalliferum gen. et sp. nov. Journal of Plant Research, 128:249-257

http://doi.org/10.1007/s10265-014-0686-3

Takashi Shiratori, Akiko Yokoyama, Ken-ichiro Ishida (2014) Phylogeny, ultrastructure, and flagellar apparatus of a new marimonad flagellate Abollifer globosa sp. nov. (Imbricatea, Cercozoa). Protist, 165:808-824

http://doi.org/10.1016/j.protis.2014.10.003    📃Tsukuba Repository

Yuichiro Kashiyama, Akiko Yokoyama, Takashi Shiratori, Isao Inouye, Yusuke Kinoshita, Tadashi Mizoguchi, Hitoshi Tamiaki (2013) 132,173-Cyclopheophorbide b enol as a catabolite of chlorophyll b in phycophagy by protists. FEBS Letters, 587:2578-2583

http://doi.org/10.1016/j.febslet.2013.06.036

Yuichiro Kashiyama, Akiko Yokoyama, Yusuke Kinoshita, Sunao Shoji, Hideaki Miyashiya, Takashi Shiratori, Hisami Suga, Kanako Ishikawa, Akira Ishikawa, Isao Inouye, Ken-ichiro Ishida, Daiki Fujinuma, Keisuke Aoki, Masami Kobayashi, Shinya Nomoto, Tadashi Mizoguchi, Hitoshi Tamiaki (2012) Ubiquity and quantitative significance of detoxification catabolism of chlorophyll associated with protistan herbivory. Proceedings of the National Academy of Sciences, 109:17328-17335

http://doi.org/10.1073/pnas.1207347109

Takashi Shiratori, Akinori Yabuki, Ken-ihiro Ishida (2012) Esquamula lacrimiformis n. g., n. sp., a new member of thaumatomonads that lacks siliceous scales. The Journal of Eukaryotic Microbiology, 59:527-536

http://doi.org/10.1111/j.1550-7408.2012.00635.x    📃Tsukuba Repository